The sex-linked region in Populus tremuloides Turesson 141 corresponds to a pericentromeric region of about two million base pairs on P. trichocarpa chromosome 19.
Identifieur interne : 002003 ( Main/Exploration ); précédent : 002002; suivant : 002004The sex-linked region in Populus tremuloides Turesson 141 corresponds to a pericentromeric region of about two million base pairs on P. trichocarpa chromosome 19.
Auteurs : B. Kersten [Allemagne] ; B. Pakull ; K. Groppe ; J. Lueneburg ; M. FladungSource :
- Plant biology (Stuttgart, Germany) [ 1438-8677 ] ; 2014.
Descripteurs français
- KwdFr :
- ADN des plantes (analyse), Appariement de bases (MeSH), Cartographie chromosomique (MeSH), Centromère (MeSH), Chromosomes de plante (MeSH), Facteurs de transcription (génétique), Fleurs (croissance et développement), Gènes de plante (MeSH), Génome végétal (MeSH), Liaison génétique (MeSH), Marqueurs génétiques (MeSH), Populus (croissance et développement), Populus (génétique), Populus (physiologie), Reproduction (génétique), Spécificité d'espèce (MeSH).
- MESH :
- analyse : ADN des plantes.
- croissance et développement : Fleurs, Populus.
- génétique : Facteurs de transcription, Populus, Reproduction.
- physiologie : Populus.
- Appariement de bases, Cartographie chromosomique, Centromère, Chromosomes de plante, Gènes de plante, Génome végétal, Liaison génétique, Marqueurs génétiques, Spécificité d'espèce.
English descriptors
- KwdEn :
- Base Pairing (MeSH), Centromere (MeSH), Chromosome Mapping (MeSH), Chromosomes, Plant (MeSH), DNA, Plant (analysis), Flowers (growth & development), Genes, Plant (MeSH), Genetic Linkage (MeSH), Genetic Markers (MeSH), Genome, Plant (MeSH), Populus (genetics), Populus (growth & development), Populus (physiology), Reproduction (genetics), Species Specificity (MeSH), Transcription Factors (genetics).
- MESH :
- chemical , analysis : DNA, Plant.
- genetics : Populus, Reproduction, Transcription Factors.
- growth & development : Flowers, Populus.
- physiology : Populus.
- Base Pairing, Centromere, Chromosome Mapping, Chromosomes, Plant, Genes, Plant, Genetic Linkage, Genetic Markers, Genome, Plant, Species Specificity.
Abstract
In the dioecious genus Populus, sex determination has been located to chromosome 19. However, despite a high degree of genome collinearity, various Populus species seem to differ with regard to the location of the sex-determining region on the respective chromosome and the apparent heterogametic sex. In this study, the boundaries of the recombination-suppressed, sex-linked region of the male P. tremuloides clone Turesson 141 were localised by genetic mapping using new SNP and InDel markers. The respective region seems to be located in a pericentromeric position. The corresponding P. trichocarpa genome region spans about two million bp and comprises 65 gene loci, which were bioinformatically evaluated for their potential as candidate genes for sex determination. Three putative transcription factor genes and four genes that are potentially involved in flower development processes, e.g. meristem transition from the vegetative to the reproductive phase, were identified. Populus tremuloides sequence data of the sex-linked region is required for a final search for candidate genes.
DOI: 10.1111/plb.12048
PubMed: 23710995
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The sex-linked region in Populus tremuloides Turesson 141 corresponds to a pericentromeric region of about two million base pairs on P. trichocarpa chromosome 19.</title><author><name sortKey="Kersten, B" sort="Kersten, B" uniqKey="Kersten B" first="B" last="Kersten">B. Kersten</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genome Research, Thuenen-Institute of Forest Genetics, Grosshansdorf, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Genome Research, Thuenen-Institute of Forest Genetics, Grosshansdorf</wicri:regionArea><wicri:noRegion>Grosshansdorf</wicri:noRegion><wicri:noRegion>Grosshansdorf</wicri:noRegion><wicri:noRegion>Grosshansdorf</wicri:noRegion></affiliation></author><author><name sortKey="Pakull, B" sort="Pakull, B" uniqKey="Pakull B" first="B" last="Pakull">B. Pakull</name></author><author><name sortKey="Groppe, K" sort="Groppe, K" uniqKey="Groppe K" first="K" last="Groppe">K. Groppe</name></author><author><name sortKey="Lueneburg, J" sort="Lueneburg, J" uniqKey="Lueneburg J" first="J" last="Lueneburg">J. Lueneburg</name></author><author><name sortKey="Fladung, M" sort="Fladung, M" uniqKey="Fladung M" first="M" last="Fladung">M. Fladung</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2014">2014</date><idno type="RBID">pubmed:23710995</idno><idno type="pmid">23710995</idno><idno type="doi">10.1111/plb.12048</idno><idno type="wicri:Area/Main/Corpus">002577</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">002577</idno><idno type="wicri:Area/Main/Curation">002577</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">002577</idno><idno type="wicri:Area/Main/Exploration">002577</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The sex-linked region in Populus tremuloides Turesson 141 corresponds to a pericentromeric region of about two million base pairs on P. trichocarpa chromosome 19.</title><author><name sortKey="Kersten, B" sort="Kersten, B" uniqKey="Kersten B" first="B" last="Kersten">B. Kersten</name><affiliation wicri:level="1"><nlm:affiliation>Department of Genome Research, Thuenen-Institute of Forest Genetics, Grosshansdorf, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Genome Research, Thuenen-Institute of Forest Genetics, Grosshansdorf</wicri:regionArea><wicri:noRegion>Grosshansdorf</wicri:noRegion><wicri:noRegion>Grosshansdorf</wicri:noRegion><wicri:noRegion>Grosshansdorf</wicri:noRegion></affiliation></author><author><name sortKey="Pakull, B" sort="Pakull, B" uniqKey="Pakull B" first="B" last="Pakull">B. Pakull</name></author><author><name sortKey="Groppe, K" sort="Groppe, K" uniqKey="Groppe K" first="K" last="Groppe">K. Groppe</name></author><author><name sortKey="Lueneburg, J" sort="Lueneburg, J" uniqKey="Lueneburg J" first="J" last="Lueneburg">J. Lueneburg</name></author><author><name sortKey="Fladung, M" sort="Fladung, M" uniqKey="Fladung M" first="M" last="Fladung">M. Fladung</name></author></analytic><series><title level="j">Plant biology (Stuttgart, Germany)</title><idno type="eISSN">1438-8677</idno><imprint><date when="2014" type="published">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Pairing (MeSH)</term><term>Centromere (MeSH)</term><term>Chromosome Mapping (MeSH)</term><term>Chromosomes, Plant (MeSH)</term><term>DNA, Plant (analysis)</term><term>Flowers (growth & development)</term><term>Genes, Plant (MeSH)</term><term>Genetic Linkage (MeSH)</term><term>Genetic Markers (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Populus (genetics)</term><term>Populus (growth & development)</term><term>Populus (physiology)</term><term>Reproduction (genetics)</term><term>Species Specificity (MeSH)</term><term>Transcription Factors (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN des plantes (analyse)</term><term>Appariement de bases (MeSH)</term><term>Cartographie chromosomique (MeSH)</term><term>Centromère (MeSH)</term><term>Chromosomes de plante (MeSH)</term><term>Facteurs de transcription (génétique)</term><term>Fleurs (croissance et développement)</term><term>Gènes de plante (MeSH)</term><term>Génome végétal (MeSH)</term><term>Liaison génétique (MeSH)</term><term>Marqueurs génétiques (MeSH)</term><term>Populus (croissance et développement)</term><term>Populus (génétique)</term><term>Populus (physiologie)</term><term>Reproduction (génétique)</term><term>Spécificité d'espèce (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>DNA, Plant</term></keywords><keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>ADN des plantes</term></keywords><keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Fleurs</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Populus</term><term>Reproduction</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Flowers</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Facteurs de transcription</term><term>Populus</term><term>Reproduction</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Populus</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Populus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Pairing</term><term>Centromere</term><term>Chromosome Mapping</term><term>Chromosomes, Plant</term><term>Genes, Plant</term><term>Genetic Linkage</term><term>Genetic Markers</term><term>Genome, Plant</term><term>Species Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Appariement de bases</term><term>Cartographie chromosomique</term><term>Centromère</term><term>Chromosomes de plante</term><term>Gènes de plante</term><term>Génome végétal</term><term>Liaison génétique</term><term>Marqueurs génétiques</term><term>Spécificité d'espèce</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">In the dioecious genus Populus, sex determination has been located to chromosome 19. However, despite a high degree of genome collinearity, various Populus species seem to differ with regard to the location of the sex-determining region on the respective chromosome and the apparent heterogametic sex. In this study, the boundaries of the recombination-suppressed, sex-linked region of the male P. tremuloides clone Turesson 141 were localised by genetic mapping using new SNP and InDel markers. The respective region seems to be located in a pericentromeric position. The corresponding P. trichocarpa genome region spans about two million bp and comprises 65 gene loci, which were bioinformatically evaluated for their potential as candidate genes for sex determination. Three putative transcription factor genes and four genes that are potentially involved in flower development processes, e.g. meristem transition from the vegetative to the reproductive phase, were identified. Populus tremuloides sequence data of the sex-linked region is required for a final search for candidate genes.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23710995</PMID><DateCompleted><Year>2014</Year><Month>10</Month><Day>14</Day></DateCompleted><DateRevised><Year>2014</Year><Month>02</Month><Day>27</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1438-8677</ISSN><JournalIssue CitedMedium="Internet"><Volume>16</Volume><Issue>2</Issue><PubDate><Year>2014</Year><Month>Mar</Month></PubDate></JournalIssue><Title>Plant biology (Stuttgart, Germany)</Title><ISOAbbreviation>Plant Biol (Stuttg)</ISOAbbreviation></Journal><ArticleTitle>The sex-linked region in Populus tremuloides Turesson 141 corresponds to a pericentromeric region of about two million base pairs on P. trichocarpa chromosome 19.</ArticleTitle><Pagination><MedlinePgn>411-8</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/plb.12048</ELocationID><Abstract><AbstractText>In the dioecious genus Populus, sex determination has been located to chromosome 19. However, despite a high degree of genome collinearity, various Populus species seem to differ with regard to the location of the sex-determining region on the respective chromosome and the apparent heterogametic sex. In this study, the boundaries of the recombination-suppressed, sex-linked region of the male P. tremuloides clone Turesson 141 were localised by genetic mapping using new SNP and InDel markers. The respective region seems to be located in a pericentromeric position. The corresponding P. trichocarpa genome region spans about two million bp and comprises 65 gene loci, which were bioinformatically evaluated for their potential as candidate genes for sex determination. Three putative transcription factor genes and four genes that are potentially involved in flower development processes, e.g. meristem transition from the vegetative to the reproductive phase, were identified. Populus tremuloides sequence data of the sex-linked region is required for a final search for candidate genes.</AbstractText><CopyrightInformation>© 2013 German Botanical Society and The Royal Botanical Society of the Netherlands.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kersten</LastName><ForeName>B</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Department of Genome Research, Thuenen-Institute of Forest Genetics, Grosshansdorf, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pakull</LastName><ForeName>B</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Groppe</LastName><ForeName>K</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Lueneburg</LastName><ForeName>J</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Fladung</LastName><ForeName>M</ForeName><Initials>M</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2013</Year><Month>05</Month><Day>24</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Plant Biol (Stuttg)</MedlineTA><NlmUniqueID>101148926</NlmUniqueID><ISSNLinking>1435-8603</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018744">DNA, Plant</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D020029" MajorTopicYN="Y">Base Pairing</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002503" MajorTopicYN="N">Centromere</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="Y">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032461" MajorTopicYN="Y">Chromosomes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018744" MajorTopicYN="N">DNA, Plant</DescriptorName><QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D035264" MajorTopicYN="N">Flowers</DescriptorName><QualifierName UI="Q000254" MajorTopicYN="Y">growth & development</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="Y">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008040" MajorTopicYN="Y">Genetic Linkage</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="N">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000254" MajorTopicYN="N">growth & development</QualifierName><QualifierName UI="Q000502" MajorTopicYN="N">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012098" MajorTopicYN="N">Reproduction</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Aspen</Keyword><Keyword MajorTopicYN="N">Populus</Keyword><Keyword MajorTopicYN="N">gender</Keyword><Keyword MajorTopicYN="N">genetic map</Keyword><Keyword MajorTopicYN="N">sex</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>02</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2013</Year><Month>04</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>5</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>5</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>10</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">23710995</ArticleId><ArticleId IdType="doi">10.1111/plb.12048</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Allemagne</li></country></list><tree><noCountry><name sortKey="Fladung, M" sort="Fladung, M" uniqKey="Fladung M" first="M" last="Fladung">M. Fladung</name><name sortKey="Groppe, K" sort="Groppe, K" uniqKey="Groppe K" first="K" last="Groppe">K. Groppe</name><name sortKey="Lueneburg, J" sort="Lueneburg, J" uniqKey="Lueneburg J" first="J" last="Lueneburg">J. Lueneburg</name><name sortKey="Pakull, B" sort="Pakull, B" uniqKey="Pakull B" first="B" last="Pakull">B. Pakull</name></noCountry><country name="Allemagne"><noRegion><name sortKey="Kersten, B" sort="Kersten, B" uniqKey="Kersten B" first="B" last="Kersten">B. Kersten</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002003 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 002003 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:23710995
|texte= The sex-linked region in Populus tremuloides Turesson 141 corresponds to a pericentromeric region of about two million base pairs on P. trichocarpa chromosome 19.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:23710995" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |